José L. Avalos

First name

José L.

Last name

Avalos

Zhang, Yanfei, Jeremy D. Cortez, Sarah K. Hammer, César Carrasco-López, Sergio García Echauri, Jessica B. Wiggins, Wei Wang, and José L. Avalos. 2022. “Biosensor for Branched-Chain Amino Acid Metabolism in Yeast and Applications in Isobutanol and Isopentanol Production”. Nature Communications. Referenced from www.nature.com: Biosensor for branched-chain amino acid metabolism in yeast and applications in isobutanol and isopentanol production.

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Jack, Joshua, Wenjin Zhu, José L. Avalos, Jinlong Gong, and Zhiyong Jason Ren. 2021. “Anode Co-Valorization for Scalable and Sustainable Electrolysis”. Green Chemistry. Referenced from pubs.rsc.org: Anode co-valorization for scalable and sustainable electrolysis.

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López, José Montaño, Lisset Duran, and José L. Avalos. 2022. “Physiological Limitations and Opportunities in Microbial Metabolic Engineering”. Nature Reviews Microbiology. Referenced from www.nature.com: Physiological limitations and opportunities in microbial metabolic engineering.

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Lalwani, Makoto A., Hinako Kawabe, Rebecca L. Mays, Shannon M. Hoffman, and José L. Avalos. 2021. “Optogenetic Control of Microbial Consortia Populations for Chemical Production”. ACS Synthetic Biology. Referenced from pubs.acs.org: Optogenetic Control of Microbial Consortia Populations for Chemical Production.

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Lalwani, Makoto A., Evan M. Zhao, Scott A. Wegner, and José L. Avalos. 2021. “The Neurospora Crassa Inducible Q System Enables Simultaneous Optogenetic Amplification and Inversion in Saccharomyces Cerevisiae for Bidirectional Control of Gene Expression”. ACS Synthetic Biology. Referenced from pubs.acs.org: The Neurospora crassa Inducible Q System Enables Simultaneous Optogenetic Amplification and Inversion in Saccharomyces cerevisiae for Bidirectional Control of Gene Expression.

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Hoffman, Shannon M., Maria Alvarez, Gilad Alfassi, Dmitry M. Rein, Sergio Garcia-Echauri, Yachin Cohen, and José L. Avalos. 2021. “Cellulosic Biofuel Production Using Emulsified Simultaneous Saccharification and Fermentation (eSSF) With Conventional and Thermotolerant Yeasts”. Biotechnology for Biofuels . Referenced from biotechnologyforbiofuels.biomedcentral.com: Cellulosic biofuel production using emulsified simultaneous saccharification and fermentation (eSSF) with conventional and thermotolerant yeasts.

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Lovelett, Robert J., Evan M. Zhao, Makoto A. Lalwani, Jared E. Toettcher, IoannisG. Kevrekidis, and José L. Avalos. 2021. “Dynamical Modeling of Optogenetic Circuits in Yeast for Metabolic Engineering Applications”. ACS Synthetic Biology 10 (2): 219–227. Referenced from pubs.acs.org: Dynamical Modeling of Optogenetic Circuits in Yeast for Metabolic Engineering Applications.

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Zhao, Evan M., Makoto A. Lalwani, Jhong-Min Chen, Paulina Orillac, Jared E. Toettcher, and José L. Avalos. 2021. “Optogenetic Amplification Circuits for Light-Induced Metabolic Control”. ACS Synthetic Biology. Referenced from pubs.acs.org: Optogenetic Amplification Circuits for Light-Induced Metabolic Control.

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Zhao, Evan M., Makoto A. Lalwani, Robert J. Lovelett, Sergio A. García-Echauri, Shannon M. Hoffman, Christopher L. Gonzalez, Jared E. Toettcher, IoannisG. Kevrekidis, and José L. Avalos. 2020. “Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering”. ACS Synthetic Biology 9 (12): 3254–3266. Referenced from pubs.acs.org: Design and Characterization of Rapid Optogenetic Circuits for Dynamic Control in Yeast Metabolic Engineering.

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Carrasco-López, César, Evan M. Zhao, Agnieszka A. Gil, Nathan Alam, Jared E. Toettcher, and José L. Avalos. 2020. “Development of Light-Responsive Protein Binding in the Monobody Non-Immunoglobulin Scaffold”. Nature Communications 11 (1): 1-13. Referenced from www.nature.com: Development of light-responsive protein binding in the monobody non-immunoglobulin scaffold.

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Kichuk, Therese C., César Carrasco‐López, and José L. Avalos. 2021. “Lights up on Organelles: Optogenetic Tools to Control Subcellular Structure and Organization”. WIREs Systems Biology and Medicine. Referenced from wires.onlinelibrary.wiley.com: Lights up on organelles: Optogenetic tools to control subcellular structure and organization.

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López, José Montaño, and José L. Avalos. 2020. “Genetically Engineered Yeast Makes Medicinal Plant Products”. Nature. Referenced from www.nature.com: Genetically engineered yeast makes medicinal plant products.

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Duran, Lisset, José Montaño López, and José L. Avalos. 2020. “¡Viva La Mitochondria!: Harnessing Yeast Mitochondria for Chemical Production”. FEMS Yeast Research 20 (6). doi:10.1093/femsyr/foaa037.

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Zhang, Yanfei, Sarah K. Hammer, Cesar Carrasco-Lopez, Sergio A. Garcia Echauri, and José L. Avalos. 2020. “Genetically Encoded Biosensors for Branched-Chain Amino Acid Metabolism to Monitor Mitochondrial and Cytosolic Production of Isobutanol and Isopentanol in Yeast”. BioRxiv. Cold Spring Harbor Laboratory. doi:10.1101/2020.03.08.982801.

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Hammer, Sarah K., Yanfei Zhang, and José L. Avalos. 2020. “Mitochondrial Compartmentalization Confers Specificity to the 2-Ketoacid Recursive Pathway: Increasing Isopentanol Production in Saccharomyces Cerevisiae”. ACS Synthetic Biology. Referenced from pubs.acs.org: Mitochondrial Compartmentalization Confers Specificity to the 2-Ketoacid Recursive Pathway: Increasing Isopentanol Production in Saccharomyces cerevisiae.

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Lane, Stephan, Yanfei Zhang, Eun Ju Yun, Leah Ziolkowski, Guochang Zhang, Yong-Su Jin, and José L. Avalos. 2019. “Xylose Assimilation Enhances the Production of Isobutanol in Engineered Saccharomyces Cerevisiae”. Biotechnology and Bioengineering. doi:10.1002/bit.27202.

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Gil, Agnieszka A., Evan M. Zhao, Maxwell Z. Wilson, Alexander G. Goglia, Cesar Carrasco-Lopez, José L. Avalos, and Jared E. Toettcher. 2020. “Optogenetic Control of Protein Binding Using Light-Switchable Nanobodies”. Nature Communications 11 (1): 1-12. Referenced from www.nature.com: Optogenetic control of protein binding using light-switchable nanobodies.

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Lalwani, Makoto A., Samantha S. Ip, Cesar Carrasco-Lopez, Evan M. Zhao, Hinako Kawabe, and José L. Avalos. 2021. “Optogenetic Control of the Lac Operon for Bacterial Chemical and Protein Production”. Nature Chemical Biology. Referenced from www.nature.com: Optogenetic control of the lac operon for bacterial chemical and protein production.

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Lovelett, Robert, José L. Avalos, and IoannisG. Kevrekidis. 2019. “Partial Observations and Conservation Laws: Grey-Box Modeling in Biotechnology and Optogenetics”. Industrial & Engineering Chemistry Research.

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Kuroda, Kouichi, Sarah K. Hammer, Yukio Watanabe, José Montaño López, Gerald R. Fink, Gregory Stephanopoulos, Mitsuyoshi Ueda, and José L. Avalos. 2019. “Critical Roles of the Pentose Phosphate Pathway and GLN3 in Isobutanol-Specific Tolerance in Yeast”. Cell Systems.

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Zhao, Evan M., Nathan Suek, Maxwell Z. Wilson, Elliot Dine, Nicole L. Pannucci, Zemer Gitai, José L. Avalos, and Jared E. Toettcher. 2019. “Light-Based Control of Metabolic Flux through Assembly of Synthetic Organelles”. Nature Chemical Biology. Referenced from www.nature.com: Light-based control of metabolic flux through assembly of synthetic organelles.

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Bracha, Dan, Mackenzie T. Walls, Ming-Tzo Wei, Lian Zhu, Martin Kurian, José L. Avalos, Jared E. Toettcher, and Clifford P. Brangwynne. 2018. “Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds”. Cell 175 (6): 1467–1480. Referenced from www.cell.com: Mapping Local and Global Liquid Phase Behavior in Living Cells Using Photo-Oligomerizable Seeds.

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Lalwani, Makoto A., Evan M. Zhao, and José L. Avalos. 2018. “Current and Future Modalities of Dynamic Control in Metabolic Engineering”. Current Opinion in Biotechnology. Referenced from www.sciencedirect.com: Current and future modalities of dynamic control in metabolic engineering.

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Zhao, Evan M., Yanfei Zhang, Justin Mehl, Helen Park, Makoto A. Lalwani, Jared E. Toettcher, and José L. Avalos. 2018. “Optogenetic Regulation of Engineered Cellular Metabolism for Microbial Chemical Production”. Nature. Referenced from www.nature.com: Optogenetic regulation of engineered cellular metabolism for microbial chemical production.

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Hammer, Sarah K., and José L. Avalos. 2017. “Uncovering the Role of Branched-Chain Amino Acid Transaminases in Saccharomyces Cerevisiae Isobutanol Biosynthesis”. Metabolic Engineering, -. doi:10.1016/j.ymben.2017.10.001.

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Hammer, Sarah K., and José L. Avalos. (2017) 2017. “Harnessing Yeast Organelles for Metabolic Engineering”. Nature Chemical Biology, 823–832. Referenced from www.nature.com: Harnessing yeast organelles for metabolic engineering.

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Zhang, Yanfei, and José L. Avalos. (2017) 2017. “Traditional and Novel Tools to Probe the Mitochondrial Metabolism in Health and Disease”. Wiley Interdisciplinary Reviews: Systems Biology and Medicine 9 (2). John Wiley & Sons, Inc. doi:10.1002/wsbm.1373.

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Adesina, Oluwakemi, Isao A. Anzai, José L. Avalos, and Buz Barstow. (2017) 2017. “Embracing Biological Solutions to the Sustainable Energy Challenge”. Chem 2 (1): 20-51. doi:10.1016/j.chempr.2016.12.009.

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