2026
Alexis, Emmanouil, Clarence W. Rowley, and José L. Avalos. “Robust Multiplicative Control in Chemical Reaction Networks.” (2026): n. pag.
Nandi, Shrinivas et al. “Rafts of Change: Microbial and Functional Dynamics in Simulated Sargassum Strandings.” (2026): n. pag.
Jiang, Virginia Q. et al. “BPS2026 – Development of a Multiscale Framework for Engineering Protein Condensates As Microreactors.” (2026): n. pag.
2025
Choi, Dasol et al. “Waste Sargassum Seaweed As a Sustainable Resource for Rare Earth Element Recovery.” (2025): n. pag.
Jang, Jaewan, and José L Avalos. “Lighting up Yeast: Overview of Optogenetics in Yeast and Their Applications to Yeast Biotechnology.” (2025): n. pag.
Espinel-Ríos, Sebastián et al. “Reinforcement Learning for Efficient and Robust Multi-Setpoint and Multi-Trajectory Tracking in Bioprocesses.” (2025): n. pag.
Wegner, Scott A et al. “Orthogonal Replication With Optogenetic Selection Evolves Yeast JEN1 into a Mevalonate Transporter.” (2025): n. pag.
Suresh, Pavana et al. “Growth Inhibition of Saccharomyces Cerevisiae by SUMO-Specific Nanobodies.” (2025): n. pag.
Alexis, Emmanouil et al. “Biochemical Implementation of Acceleration Sensing and PIDA Control.” (2025): n. pag.
Tang, Allison Y. et al. “Anti-Pdc1p Nanobody As a Genetically Encoded Inhibitor of Ethanol Production Enables Dual Transcriptional and Post-Translational Controls of Yeast Fermentations.” (2025): n. pag.
Lee, Dongheon et al. “Principles of Metabolic Pathway Control by Biomolecular Condensates in Cells.” (2025): n. pag.
González, Lidice et al. “HP1-Enhanced Chromatin Compaction Stabilizes a Synthetic Metabolic Circuit in Yeast.” bioRxiv (2025): n. pag.
Kichuk, Therese, and José L. Avalos. “Shape Matters: The Utility and Analysis of Altered Yeast Mitochondrial Morphology in Health, Disease, and Biotechnology.” (2025): n. pag.
Espinel-Ríos, Sebastián, José Montaño López, and José L Avalos. “Omics-Driven Hybrid Dynamic Modeling of Bioprocesses With Uncertainty Estimation.” (2025): n. pag.
Hoffman, Shannon M. et al. “Balancing Doses of EL222 and Light Improves Optogenetic Induction of Protein Production in Komagataella Phaffii.” bioRxiv (2025): n. pag.
2024
Wegner, Scott A., Hahn Kim, and José L. Avalos. “Optogenetic Screening of MCT1 Activity Implicates a Cluster of Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) As Inhibitors of Lactate Transport.” PLOS ONE (2024): n. pag.
Lee, Dongheon et al. “Principles of Metabolic Pathway Control By Biomolecular Condensates in Cells.” (2024): n. pag.
Siu, Ka-Hei, and Jose Avalos. “Engineering Cellular Processes through Synthetic Membrane-Associated Biomolecular Condensates.” (2024): n. pag.
Tang, Allison, and José Avalos. “Optogenetic Control of Enzyme Degradation for Metabolic Pathway Tunability.” (2024): n. pag.
Espinel-Ríos, Sebastián et al. “Enhancing Reinforcement Learning for Population Setpoint Tracking in Co-Cultures.” (2024): n. pag.
Tang, Allison Y et al. “Light-Induced Nanobody-Mediated Targeted Protein Degradation for Metabolic Flux Control.” (2024): n. pag.
Espinel-Ríos, Sebastián, José Montaño López, and José L Avalos. “Omics-Driven Hybrid Dynamic Modeling of Bioprocesses With Uncertainty Estimation.” arXiv (2024): n. pag.
Wegner, Scott A, and José L Avalos. “Mevalonate Secretion Is Not Mediated by a Singular Non-Essential Transporter in Saccharomyces Cerevisiae..” Biotechnology Notes (2024): n. pag. Print.
Alexis, Emmanouil et al. “Biochemical Implementation of Acceleration Sensing and PIDA Control.” bioRxiv (2024): n. pag.
Alexis, Emmanouil et al. “AC-BioSD: A Biomolecular Signal Differentiator Module With Enhanced Performance.” IEEE Control Systems Letters (2024): n. pag.