2026
Jiang, Virginia et al. “Design of Self-Assembling Biomolecular Condensates to Elevate Bioproduction of Plant Natural Products.” 2026 AIChE Annual Meeting (2026): n. pag.
Choi, Dasol et al. “Mechanistic Insights into Rare Earth Element Biosorption By Sargassum Seaweed for Sustainable Biomaterial Engineering.” 2026 AIChE Annual Meeting (2026): n. pag.
Jang, Jaewan et al. “Dynamic Control of Microbial Consortia of Populations Using Multichromatic Inputs.” 2026 AIChE Annual Meeting (2026): n. pag.
Avalos, JL et al. “Recent Patents Relating to Methods and Devices for Optogenetic Control of Cells..” nature biotechnology (2026): n. pag.
Siu, Ka-Hei et al. “Spatial Organization of Enzymes and Cofactors in Synthetic Membrane-Associated Condensates (sMACs).” bioRxiv (2026): n. pag.
Xu, Ke et al. “Enhanced GPP Synthesis by Erg20p-Peptide Fusions and Biomolecular Condensates Boosts Monoterpene Production in Yeast.” bioRxiv (2026): n. pag.
Alexis, Emmanouil et al. “Noise Analysis of Derivative-Action Biomolecular Topologies.” bioRxiv (2026): n. pag.
Cortez, Jeremy D, and José L Avalos. “Heterologous Iron-Sulfur Cluster Biogenesis and Delivery for Cytosolic Isobutanol and Isopentanol Production in Saccharomyces Cerevisiae..” Biorxiv: the Preprint Server for Biology (2026): n. pag.
Fu, Kelsey et al. “Agentic Laboratories of the Future: Towards World Models for Scientific Discovery.” Preprints (2026): n. pag.
Alexis, Emmanouil, Clarence W. Rowley, and José L. Avalos. “Robust Multiplicative Control in Chemical Reaction Networks.” (2026): n. pag.
Nandi, Shrinivas et al. “Rafts of Change: Microbial and Functional Dynamics in Simulated Sargassum Strandings.” (2026): n. pag.
Jiang, Virginia Q. et al. “BPS2026 – Development of a Multiscale Framework for Engineering Protein Condensates As Microreactors.” (2026): n. pag.
2025
Choi, Dasol et al. “Waste Sargassum Seaweed As a Sustainable Resource for Rare Earth Element Recovery.” (2025): n. pag.
Jang, Jaewan, and José L Avalos. “Lighting up Yeast: Overview of Optogenetics in Yeast and Their Applications to Yeast Biotechnology.” (2025): n. pag.
Espinel-Ríos, Sebastián et al. “Reinforcement Learning for Efficient and Robust Multi-Setpoint and Multi-Trajectory Tracking in Bioprocesses.” (2025): n. pag.
Wegner, Scott A et al. “Orthogonal Replication With Optogenetic Selection Evolves Yeast JEN1 into a Mevalonate Transporter.” (2025): n. pag.
Suresh, Pavana et al. “Growth Inhibition of Saccharomyces Cerevisiae by SUMO-Specific Nanobodies.” (2025): n. pag.
Alexis, Emmanouil et al. “Biochemical Implementation of Acceleration Sensing and PIDA Control.” (2025): n. pag.
Tang, Allison Y. et al. “Anti-Pdc1p Nanobody As a Genetically Encoded Inhibitor of Ethanol Production Enables Dual Transcriptional and Post-Translational Controls of Yeast Fermentations.” (2025): n. pag.
Lee, Dongheon et al. “Principles of Metabolic Pathway Control by Biomolecular Condensates in Cells.” (2025): n. pag.
González, Lidice et al. “HP1-Enhanced Chromatin Compaction Stabilizes a Synthetic Metabolic Circuit in Yeast.” bioRxiv (2025): n. pag.
Kichuk, Therese, and José L. Avalos. “Shape Matters: The Utility and Analysis of Altered Yeast Mitochondrial Morphology in Health, Disease, and Biotechnology.” (2025): n. pag.
Espinel-Ríos, Sebastián, José Montaño López, and José L Avalos. “Omics-Driven Hybrid Dynamic Modeling of Bioprocesses With Uncertainty Estimation.” (2025): n. pag.
Hoffman, Shannon M. et al. “Balancing Doses of EL222 and Light Improves Optogenetic Induction of Protein Production in Komagataella Phaffii.” bioRxiv (2025): n. pag.
2024
Wegner, Scott A., Hahn Kim, and José L. Avalos. “Optogenetic Screening of MCT1 Activity Implicates a Cluster of Non-Steroidal Anti-Inflammatory Drugs (NSAIDs) As Inhibitors of Lactate Transport.” PLOS ONE (2024): n. pag.